In Uefa Cup you get bonus points only after the 1/8 finals and the max bonus you can get is 3 points.
The teams that will qualify for the 1/4 finals get 1 point, the teams that qualify for the semifinals get another 1 pt bonus and the 2 teams that will qualify for the final get 1 more point. The winner doesn't get bonus.
Last season Zenit and Rangers got 3 bonus points this way, Fiorentina and Bayern got 2 bonus points while Getafe, Levercusen, Sporting and PSV got 1 bonus point each.
The teams that will qualify for the 1/4 finals get 1 point, the teams that qualify for the semifinals get another 1 pt bonus and the 2 teams that will qualify for the final get 1 more point. The winner doesn't get bonus.
Last season Zenit and Rangers got 3 bonus points this way, Fiorentina and Bayern got 2 bonus points while Getafe, Levercusen, Sporting and PSV got 1 bonus point each.

